Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10499601	0.88[EUR][1000 genomes]
rs12114004	0.86[EUR][1000 genomes]
rs12154511	0.86[EUR][1000 genomes]
rs1403983	0.86[EUR][1000 genomes]
rs1524051	0.80[EUR][1000 genomes]
rs1524052	0.80[EUR][1000 genomes]
rs17171277	0.92[EUR][1000 genomes]
rs1949774	0.94[EUR][1000 genomes]
rs2140532	0.86[EUR][1000 genomes]
rs2392527	0.80[EUR][1000 genomes]
rs4430011	0.80[EUR][1000 genomes]
rs61618798	0.84[EUR][1000 genomes]
rs73691906	0.82[EUR][1000 genomes]
rs73691948	0.88[EUR][1000 genomes]
rs73691971	0.86[EUR][1000 genomes]
rs73691975	0.86[EUR][1000 genomes]
rs952368	0.80[EUR][1000 genomes]
rs952369	0.80[EUR][1000 genomes]
rs9648058	0.88[EUR][1000 genomes]
rs9648456	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648458	0.88[EUR][1000 genomes]
rs9648459	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv606624	chr7:38067723-38123667	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38089600-38093800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:38090800-38092200	Weak transcription	Pancreas	Pancrea
3	chr7:38091000-38092600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:38091000-38092800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:38091200-38094200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:38091400-38092200	Enhancers	NHDF-Ad	bronchial
7	chr7:38091400-38092800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:38091600-38092000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:38091600-38092400	Enhancers	Osteobl	bone
10	chr7:38091600-38092600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:38091600-38095000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:38091800-38093800	Weak transcription	Adipose Nuclei	Adipose

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