Variant report

Variant	rs73691906
Chromosome Location	chr7:38065091-38065092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499601	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11509900	0.82[EUR][1000 genomes]
rs11977267	0.81[AFR][1000 genomes]
rs12114004	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12154511	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349396	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1376254	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1376267	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1403983	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1464716	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524051	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524052	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17171245	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171248	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171277	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1949774	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140532	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2392527	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4430011	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55971087	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57948667	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60859361	0.89[AFR][1000 genomes]
rs61618798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691905	0.85[AFR][1000 genomes]
rs73691948	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73691971	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73691975	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs952368	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs952369	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9648058	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9648456	0.92[EUR][1000 genomes]
rs9648458	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9648459	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38060000-38067400	Weak transcription	HSMM	muscle
2	chr7:38064000-38066000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:38064600-38065200	Enhancers	Stomach Mucosa	stomach
4	chr7:38064800-38065200	Weak transcription	A549	lung
5	chr7:38065000-38066000	Enhancers	Muscle Satellite Cultured Cells	--

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