Variant report

Variant	rs11977267
Chromosome Location	chr7:38092455-38092456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11979978	0.90[AFR][1000 genomes]
rs36089132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60859361	0.92[AFR][1000 genomes]
rs61618798	0.92[AFR][1000 genomes]
rs73691905	1.00[AMR][1000 genomes]
rs73691906	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv606624	chr7:38067723-38123667	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38089600-38093800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:38091000-38092600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:38091000-38092800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:38091200-38094200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:38091400-38092800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:38091600-38092600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:38091600-38095000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:38091800-38093800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:38092000-38092800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:38092200-38092600	Enhancers	Fetal Heart	heart
11	chr7:38092400-38092600	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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