Variant report

Variant	rs61618798
Chromosome Location	chr7:38070274-38070275
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10499601	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11509900	0.84[EUR][1000 genomes]
rs11977267	0.92[AFR][1000 genomes]
rs11979978	0.83[AFR][1000 genomes]
rs12114004	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12154511	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349396	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1376254	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1376267	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1403983	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1464716	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524051	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524052	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17171245	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171248	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171277	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1949774	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140532	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2392527	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36089132	0.84[AFR][1000 genomes]
rs4430011	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55971087	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57948667	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60859361	1.00[AFR][1000 genomes]
rs73691906	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691948	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73691971	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73691975	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs952368	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs952369	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9648058	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9648456	0.90[EUR][1000 genomes]
rs9648458	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9648459	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv606624	chr7:38067723-38123667	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38065200-38070800	Weak transcription	Stomach Mucosa	stomach
2	chr7:38067200-38071200	Weak transcription	Ovary	ovary
3	chr7:38067600-38070600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links