Variant report

Variant	rs17171245
Chromosome Location	chr7:38027287-38027288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38016876..38020141-chr7:38026187..38029240,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10488618	0.86[ASN][1000 genomes]
rs1349396	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1376254	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376267	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464716	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1524051	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1524052	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17171238	0.86[ASN][1000 genomes]
rs17171240	0.90[ASN][1000 genomes]
rs17171248	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171256	0.84[AFR][1000 genomes]
rs1949774	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2044830	0.90[ASN][1000 genomes]
rs2122620	0.86[ASN][1000 genomes]
rs2392527	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4430011	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55971087	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57948667	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61618798	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6965376	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs73691906	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952368	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952369	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9648456	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38024800-38027800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:38025800-38027400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:38025800-38027600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:38025800-38028000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:38025800-38028000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:38025800-38029000	Enhancers	HSMM	muscle
7	chr7:38026000-38027400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:38026000-38027600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:38026000-38028200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:38026200-38027600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:38026200-38027600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:38026200-38027600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:38026200-38028000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:38026400-38027400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:38026400-38027600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:38026400-38027600	Enhancers	NH-A	brain
17	chr7:38026400-38027600	Enhancers	Osteobl	bone
18	chr7:38026600-38027400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:38026600-38027600	Enhancers	NHDF-Ad	bronchial
20	chr7:38026600-38027800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:38026600-38028200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:38026800-38027600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:38026800-38027600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:38026800-38027600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr7:38026800-38028200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:38026800-38028200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr7:38026800-38029000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr7:38027000-38027400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:38027000-38028000	Enhancers	Primary hematopoietic stem cells	blood
30	chr7:38027000-38030000	Weak transcription	Pancreas	Pancrea
31	chr7:38027200-38027600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:38027200-38027600	Enhancers	A549	lung
33	chr7:38027200-38027600	Flanking Active TSS	HSMMtube	muscle
34	chr7:38027200-38028400	Weak transcription	Stomach Mucosa	stomach

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