Variant report

Variant	rs55971087
Chromosome Location	chr7:38064533-38064534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1349396	0.80[ASN][1000 genomes]
rs1376254	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1376267	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1464716	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524051	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1524052	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17171245	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171248	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1949774	0.93[ASN][1000 genomes]
rs2392527	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4430011	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57948667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61618798	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73691906	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952368	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs952369	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9648456	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38060000-38067400	Weak transcription	HSMM	muscle
2	chr7:38064000-38066000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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