Variant report

Variant	rs2392527
Chromosome Location	chr7:38041808-38041809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10488618	0.83[ASN][1000 genomes]
rs10499601	0.81[EUR][1000 genomes]
rs11509900	0.80[EUR][1000 genomes]
rs12114004	0.82[EUR][1000 genomes]
rs12154511	0.82[EUR][1000 genomes]
rs1349396	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1376254	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376267	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403983	0.82[EUR][1000 genomes]
rs1464716	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171238	0.83[ASN][1000 genomes]
rs17171240	0.86[ASN][1000 genomes]
rs17171245	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17171248	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17171277	0.84[EUR][1000 genomes]
rs1949774	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2044830	0.86[ASN][1000 genomes]
rs2122620	0.83[ASN][1000 genomes]
rs2140532	0.82[EUR][1000 genomes]
rs4430011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971087	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57948667	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61618798	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6965376	0.83[ASN][1000 genomes]
rs73691906	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73691948	0.81[EUR][1000 genomes]
rs73691971	0.82[EUR][1000 genomes]
rs73691975	0.82[EUR][1000 genomes]
rs952368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952369	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648058	0.81[EUR][1000 genomes]
rs9648456	0.94[EUR][1000 genomes]
rs9648458	0.81[EUR][1000 genomes]
rs9648459	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38038400-38043000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:38040400-38042400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:38040600-38042000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:38040600-38042000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:38040600-38042600	Enhancers	HSMMtube	muscle
6	chr7:38040800-38042000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:38040800-38042400	Weak transcription	Psoas Muscle	Psoas
8	chr7:38041400-38043000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:38041600-38043400	Enhancers	HSMM	muscle
10	chr7:38041800-38042200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:38041800-38042400	Enhancers	Osteobl	bone
12	chr7:38041800-38043400	Enhancers	Adipose Nuclei	Adipose

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