Variant report

Variant	rs17171277
Chromosome Location	chr7:38098055-38098056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10499601	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11509900	0.92[EUR][1000 genomes]
rs12114004	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154511	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376254	0.81[EUR][1000 genomes]
rs1376267	0.81[EUR][1000 genomes]
rs1403983	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524051	0.84[EUR][1000 genomes]
rs1524052	0.84[EUR][1000 genomes]
rs17171248	0.81[EUR][1000 genomes]
rs1949774	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2140532	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392527	0.84[EUR][1000 genomes]
rs4430011	0.84[EUR][1000 genomes]
rs61618798	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6965376	0.88[CHB][hapmap]
rs73691906	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73691948	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691971	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691975	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952368	0.84[EUR][1000 genomes]
rs952369	0.84[EUR][1000 genomes]
rs9648058	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648458	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648459	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv606624	chr7:38067723-38123667	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887962	chr7:38093233-38203341	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17171277	HBG1	trans	brain	seeQTL
rs17171277	HBG2	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38095400-38098200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links