Variant report
| Variant | rs73691975 |
|---|---|
| Chromosome Location | chr7:38147931-38147932 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10499601 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11509900 | 0.86[EUR][1000 genomes] |
| rs12114004 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12154511 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1403983 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1524051 | 0.82[EUR][1000 genomes] |
| rs1524052 | 0.82[EUR][1000 genomes] |
| rs17171277 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949774 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2140532 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2392527 | 0.82[EUR][1000 genomes] |
| rs4430011 | 0.82[EUR][1000 genomes] |
| rs61618798 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs73691906 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs73691948 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73691971 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs952368 | 0.82[EUR][1000 genomes] |
| rs952369 | 0.82[EUR][1000 genomes] |
| rs9648058 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9648458 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9648459 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8074 | chr7:37865340-38210087 | ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv887962 | chr7:38093233-38203341 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:38147800-38151600 | Weak transcription | GM12878-XiMat | blood |
