Variant report

Variant	rs10085684
Chromosome Location	chr7:66844011-66844012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66843281..66844030-chr7:69396720..69397270,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10227991	0.91[EUR][1000 genomes]
rs10240702	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10242530	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10278852	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280504	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11975662	0.90[ASN][1000 genomes]
rs12673116	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698580	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438181	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17145225	0.81[EUR][1000 genomes]
rs2075082	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2110004	0.95[AMR][1000 genomes]
rs28540856	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28542443	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28718590	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34349239	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34457538	0.81[EUR][1000 genomes]
rs4521652	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6460339	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6944277	0.81[EUR][1000 genomes]
rs6945404	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6957404	0.95[ASN][1000 genomes]
rs6957846	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73135830	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73148464	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73148486	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73150465	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73150492	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73150498	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73152206	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7779003	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7789199	0.91[EUR][1000 genomes]
rs9654869	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3374929	chr7:66843317-66848115	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv33458	chr7:66843998-66849444	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10085684	FLJ13195	cis	multi-tissue	Pritchard

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66842800-66844200	Enhancers	Fetal Muscle Leg	muscle
2	chr7:66843000-66847200	Enhancers	Fetal Stomach	stomach
3	chr7:66843800-66844800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:66843800-66845000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:66843800-66845000	Weak transcription	Fetal Lung	lung
6	chr7:66843800-66845400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:66843800-66845400	Weak transcription	Spleen	Spleen
8	chr7:66844000-66845000	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:66844000-66845000	Weak transcription	Ovary	ovary

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