Variant report

Variant	rs11975662
Chromosome Location	chr7:66826360-66826361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085684	0.90[ASN][1000 genomes]
rs10227991	0.89[ASN][1000 genomes]
rs10242530	0.90[ASN][1000 genomes]
rs10278852	0.91[ASN][1000 genomes]
rs10280504	1.00[ASN][1000 genomes]
rs12673116	0.91[ASN][1000 genomes]
rs12698580	0.85[ASN][1000 genomes]
rs13438181	0.86[ASN][1000 genomes]
rs2075082	0.95[ASN][1000 genomes]
rs28540856	0.92[ASN][1000 genomes]
rs28542443	0.97[ASN][1000 genomes]
rs28718590	1.00[ASN][1000 genomes]
rs34349239	0.85[ASN][1000 genomes]
rs4521652	0.95[ASN][1000 genomes]
rs6460339	0.92[ASN][1000 genomes]
rs6945404	0.88[ASN][1000 genomes]
rs6957404	0.95[ASN][1000 genomes]
rs6957846	0.95[ASN][1000 genomes]
rs73135830	1.00[ASN][1000 genomes]
rs73148449	0.87[ASN][1000 genomes]
rs73148464	0.92[ASN][1000 genomes]
rs73148486	0.95[ASN][1000 genomes]
rs73150465	1.00[ASN][1000 genomes]
rs73150492	1.00[ASN][1000 genomes]
rs73150498	1.00[ASN][1000 genomes]
rs73152206	1.00[ASN][1000 genomes]
rs7779003	0.89[ASN][1000 genomes]
rs7789199	0.88[ASN][1000 genomes]
rs9654869	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv966840	chr7:66821082-66833953	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66810200-66830400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:66823000-66829000	Weak transcription	Right Ventricle	heart
3	chr7:66823000-66829400	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:66823000-66832200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:66823200-66829400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:66823200-66832000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:66823600-66827200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:66824200-66830000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:66824600-66826800	Enhancers	K562	blood
10	chr7:66825200-66830600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:66825400-66829600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:66825600-66828200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:66826200-66826400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:66826200-66826400	Enhancers	Placenta	Placenta
15	chr7:66826200-66826400	Weak transcription	Psoas Muscle	Psoas

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