Variant report

Variant	rs73150465
Chromosome Location	chr7:66818965-66818966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085684	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10227991	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10242530	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10278852	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10280504	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975662	1.00[ASN][1000 genomes]
rs12673116	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12698580	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13438181	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075082	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28540856	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28542443	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718590	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349239	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4521652	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6460339	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6945404	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6957404	0.95[ASN][1000 genomes]
rs6957846	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73135830	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148449	0.87[ASN][1000 genomes]
rs73148464	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73148486	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73150492	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150498	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73152206	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779003	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7789199	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9654869	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66807200-66819600	Weak transcription	Brain Anterior Caudate	brain
2	chr7:66807200-66822400	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:66808400-66822200	Weak transcription	Right Ventricle	heart
4	chr7:66809800-66822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:66809800-66822800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:66810000-66820800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:66810000-66822200	Weak transcription	Aorta	Aorta
8	chr7:66810000-66822200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:66810200-66821400	Weak transcription	Ovary	ovary
10	chr7:66810200-66821600	Weak transcription	Adipose Nuclei	Adipose
11	chr7:66810200-66821800	Weak transcription	Liver	Liver
12	chr7:66810200-66822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:66810200-66822200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:66810200-66822800	Weak transcription	Brain Angular Gyrus	brain
15	chr7:66810200-66830400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:66810400-66819800	Weak transcription	Primary T cells from cord blood	blood
17	chr7:66810600-66821000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:66811200-66822000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:66811200-66822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:66811600-66822800	Weak transcription	Brain Substantia Nigra	brain
21	chr7:66811600-66826000	Weak transcription	Psoas Muscle	Psoas
22	chr7:66813600-66821600	Weak transcription	Fetal Stomach	stomach
23	chr7:66815200-66821000	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:66818200-66821000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:66818400-66819400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:66818400-66822600	Weak transcription	Left Ventricle	heart

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