Variant report

Variant	rs10085736
Chromosome Location	chr7:103128083-103128084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:103127872-103128385	MCF-7	breast:	n/a	n/a
2	FOXA1	chr7:103127730-103128420	HepG2	liver:	n/a	chr7:103128047-103128062 chr7:103128018-103128030
3	SIN3AK20	chr7:103127784-103128463	MCF-7	breast:	n/a	n/a
4	TEAD4	chr7:103127833-103128318	HepG2	liver:	n/a	n/a
5	FOXA2	chr7:103127897-103128255	HepG2	liver:	n/a	chr7:103128018-103128030
6	REST	chr7:103127932-103128187	HepG2	liver:	n/a	n/a
7	MXI1	chr7:103127993-103128198	HepG2	liver:	n/a	n/a
8	MYBL2	chr7:103127744-103128313	HepG2	liver:	n/a	n/a
9	NR2F2	chr7:103127794-103128458	MCF-7	breast:	n/a	n/a
10	BHLHE40	chr7:103127976-103128148	HepG2	liver:	n/a	n/a
11	MBD4	chr7:103127842-103128365	HepG2	liver:	n/a	n/a
12	FOXA1	chr7:103127674-103128399	HepG2	liver:	n/a	chr7:103128047-103128062 chr7:103128018-103128030
13	FOXA1	chr7:103127767-103128329	HepG2	liver:	n/a	chr7:103128047-103128062 chr7:103128018-103128030
14	FOXA2	chr7:103127574-103128695	HepG2	liver:	n/a	chr7:103128632-103128644 chr7:103128018-103128030
15	RXRA	chr7:103127936-103128196	HepG2	liver:	n/a	chr7:103128133-103128146 chr7:103128133-103128146 chr7:103128133-103128146
16	NR2F2	chr7:103127833-103128401	MCF-7	breast:	n/a	n/a
17	TCF12	chr7:103127741-103128374	A549	lung:	n/a	chr7:103128021-103128030
18	FOXA2	chr7:103127953-103128237	A549	lung:	n/a	chr7:103128018-103128030
19	CREB1	chr7:103127920-103128293	HepG2	liver:	n/a	n/a
20	ARID3A	chr7:103127896-103128246	HepG2	liver:	n/a	n/a
21	NFIC	chr7:103127856-103128177	HepG2	liver:	n/a	n/a
22	FOXA1	chr7:103127839-103128246	HepG2	liver:	n/a	chr7:103128047-103128062 chr7:103128018-103128030
23	FOXA2	chr7:103127872-103128246	A549	lung:	n/a	chr7:103128018-103128030
24	NFIC	chr7:103127791-103128287	HepG2	liver:	n/a	n/a
25	NR2F2	chr7:103127824-103128369	HepG2	liver:	n/a	n/a
26	NR2F2	chr7:103127884-103128458	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RELN	TF binding region
RN7SKP86	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1024559	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10262559	0.81[CHB][hapmap]
rs10282605	0.81[CHB][hapmap]
rs11979750	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11979752	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11983689	0.88[CHB][hapmap]
rs12705123	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13229533	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232021	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13235135	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13239318	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17150781	0.83[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152161	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2079469	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2528873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2528875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711865	0.81[CHB][hapmap]
rs2711882	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711883	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711887	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34079239	0.80[EUR][1000 genomes]
rs34953117	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35246772	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35603368	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823990	0.81[CEU][hapmap];0.94[CHB][hapmap];0.80[EUR][1000 genomes]
rs62480384	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736707	0.86[AMR][1000 genomes]
rs7804453	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103121800-103130800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:103122800-103128800	Weak transcription	Brain Substantia Nigra	brain
4	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:103123600-103130000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:103123800-103130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:103124200-103129200	Weak transcription	Brain Anterior Caudate	brain
8	chr7:103125200-103129000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:103128000-103128800	Enhancers	HepG2	liver
10	chr7:103128000-103131400	Strong transcription	K562	blood

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