Variant report

Variant	rs10282605
Chromosome Location	chr7:103162370-103162371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103160470..103163343-chr7:103165325..103168288,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085736	0.81[CHB][hapmap]
rs1024559	0.81[CHB][hapmap]
rs10249128	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10262559	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11971743	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11976900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983689	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs13232021	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs13235135	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs13239318	0.81[CHB][hapmap]
rs17152161	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs2191706	0.82[EUR][1000 genomes]
rs2237622	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240962	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2256517	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2528864	0.94[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs2528873	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2528875	0.87[CHB][hapmap]
rs2711862	0.82[ASN][1000 genomes]
rs2711863	0.82[EUR][1000 genomes]
rs2711865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2711883	0.88[CHD][hapmap]
rs34079239	0.81[ASN][1000 genomes]
rs362784	0.85[JPT][hapmap]
rs3823990	0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs56345626	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6960993	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6961019	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7788128	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7804453	0.81[CHB][hapmap]
rs7808106	0.81[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10282605	FBXO24	cis	cerebellum	SCAN
rs10282605	SPDYE3	cis	cerebellum	SCAN
rs10282605	MOSPD3	cis	parietal	SCAN
rs10282605	CUX1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:103137400-103164400	Weak transcription	Brain Anterior Caudate	brain
3	chr7:103156000-103162400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:103156400-103163800	Weak transcription	Brain Substantia Nigra	brain
5	chr7:103158000-103198600	Weak transcription	Liver	Liver
6	chr7:103161000-103168000	Weak transcription	HepG2	liver
7	chr7:103161400-103163400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:103162200-103162600	Enhancers	HUES64 Cell Line	embryonic stem cell

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