Variant report

Variant	rs7808106
Chromosome Location	chr7:103125585-103125586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1024559	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10262559	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs10282605	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs11979750	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11979752	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11983689	0.87[CHB][hapmap]
rs12705123	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13229533	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13232021	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13235135	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13239318	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17150781	0.83[CEU][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17152161	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2079469	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237622	0.81[CHB][hapmap]
rs2528873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2528875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2711865	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs2711882	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2711883	0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2711887	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34953117	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35246772	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35603368	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823990	0.83[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap]
rs62480384	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs736707	0.84[AMR][1000 genomes]
rs7804453	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7808106	ZAN	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103121400-103127000	Strong transcription	HepG2	liver
3	chr7:103121800-103130800	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:103122400-103126800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103122400-103128000	Weak transcription	K562	blood
6	chr7:103122800-103128800	Weak transcription	Brain Substantia Nigra	brain
7	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:103123600-103130000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:103123800-103130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:103124200-103129200	Weak transcription	Brain Anterior Caudate	brain
11	chr7:103125200-103129000	Weak transcription	Brain Inferior Temporal Lobe	brain

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