Variant report

Variant	rs10085743
Chromosome Location	chrX:107200500-107200501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10233208	1.00[EUR][1000 genomes]
rs10236812	1.00[EUR][1000 genomes]
rs10237258	1.00[EUR][1000 genomes]
rs10248224	1.00[EUR][1000 genomes]
rs10499935	1.00[EUR][1000 genomes]
rs28406061	1.00[EUR][1000 genomes]
rs28582543	1.00[EUR][1000 genomes]
rs73406434	1.00[EUR][1000 genomes]
rs73711805	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531153	chrX:106767092-107508809	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:107181600-107206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chrX:107184800-107202600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:107192800-107202400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:107192800-107204800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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