Variant report

Variant	rs73406434
Chromosome Location	chr7:96775603-96775604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96774472..96776990-chr7:96778997..96783154,4	K562	blood:
2	chr7:96746815..96748527-chr7:96774401..96776566,2	K562	blood:
3	chr7:96775014..96778181-chr7:96779788..96783154,4	K562	blood:
4	chr7:96756335..96758399-chr7:96773893..96776868,2	K562	blood:

Variant related genes	Relation type
ENSG00000196636	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10085743	1.00[EUR][1000 genomes]
rs10233208	1.00[EUR][1000 genomes]
rs10236812	1.00[EUR][1000 genomes]
rs10237258	1.00[EUR][1000 genomes]
rs10248224	1.00[EUR][1000 genomes]
rs10499935	1.00[EUR][1000 genomes]
rs2204509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28406061	1.00[EUR][1000 genomes]
rs28582543	1.00[EUR][1000 genomes]
rs60114973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60821810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61277211	1.00[EUR][1000 genomes]
rs61402239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404541	1.00[AMR][1000 genomes]
rs73404545	1.00[AMR][1000 genomes]
rs73406412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711805	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96760400-96796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:96768400-96789000	Weak transcription	Aorta	Aorta
3	chr7:96768800-96790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:96768800-96797800	Weak transcription	Left Ventricle	heart
5	chr7:96769000-96778800	Weak transcription	Fetal Lung	lung
6	chr7:96769000-96789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:96769000-96790000	Weak transcription	Ovary	ovary
8	chr7:96769000-96799600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:96769200-96789800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:96769200-96791200	Weak transcription	Fetal Kidney	kidney
12	chr7:96769400-96793400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:96769600-96780600	Weak transcription	Primary T cells from cord blood	blood
14	chr7:96769600-96783000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:96769600-96788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:96769600-96788800	Weak transcription	Primary B cells from cord blood	blood
17	chr7:96769600-96789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:96769800-96788400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:96769800-96789000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:96771200-96781000	Weak transcription	K562	blood
21	chr7:96771400-96780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:96771400-96784200	Weak transcription	Liver	Liver
23	chr7:96771400-96818200	Weak transcription	A549	lung
24	chr7:96771600-96777200	Weak transcription	Fetal Intestine Small	intestine
25	chr7:96771600-96784200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:96771600-96786400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:96771800-96779200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:96772000-96779200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:96772400-96782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:96772400-96788800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr7:96772800-96788400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:96773000-96778800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:96773000-96779000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:96773000-96779200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:96773000-96786400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:96773200-96779000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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