Variant report

Variant	rs10499935
Chromosome Location	chr7:96800894-96800895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96765006..96767658-chr7:96799778..96802504,2	K562	blood:
2	chr7:96791280..96793153-chr7:96799755..96801973,2	K562	blood:
3	chr7:96794189..96796264-chr7:96799436..96802402,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085743	1.00[EUR][1000 genomes]
rs10233208	1.00[EUR][1000 genomes]
rs10236812	1.00[EUR][1000 genomes]
rs10237258	1.00[EUR][1000 genomes]
rs10248224	1.00[EUR][1000 genomes]
rs2204509	1.00[EUR][1000 genomes]
rs28406061	1.00[EUR][1000 genomes]
rs28582543	1.00[EUR][1000 genomes]
rs56966506	1.00[AMR][1000 genomes]
rs60114973	1.00[EUR][1000 genomes]
rs60821810	1.00[EUR][1000 genomes]
rs61277211	1.00[EUR][1000 genomes]
rs61402239	1.00[EUR][1000 genomes]
rs73392109	1.00[AMR][1000 genomes]
rs73404521	1.00[AMR][1000 genomes]
rs73404532	1.00[AMR][1000 genomes]
rs73404534	1.00[AMR][1000 genomes]
rs73406412	1.00[EUR][1000 genomes]
rs73406431	1.00[EUR][1000 genomes]
rs73406434	1.00[EUR][1000 genomes]
rs73711805	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:96771400-96818200	Weak transcription	A549	lung
3	chr7:96789400-96812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96789600-96805200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:96790600-96811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:96790600-96811600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:96791800-96811600	Weak transcription	Adipose Nuclei	Adipose
14	chr7:96796000-96811800	Weak transcription	K562	blood
15	chr7:96797400-96801400	Weak transcription	NHEK	skin
16	chr7:96797400-96811200	Weak transcription	HepG2	liver
17	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
19	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
21	chr7:96797600-96810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:96797600-96811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:96797600-96811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:96797800-96816000	Weak transcription	Primary B cells from cord blood	blood
26	chr7:96798000-96810200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:96798000-96811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:96798200-96810400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:96799200-96812200	Weak transcription	GM12878-XiMat	blood
30	chr7:96800800-96812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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