Variant report
| Variant | rs10086739 |
|---|---|
| Chromosome Location | chr8:85072065-85072066 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| TPM3P3 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10103882 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10808859 | 0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs12546578 | 0.81[CHB][hapmap];0.94[JPT][hapmap] |
| rs1550215 | 0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs1866087 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7815593 | 0.95[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753846 | chr8:84637092-85239703 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv611646 | chr8:85048690-85112377 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv1767481 | chr8:85072063-85072065 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv1989257 | chr8:85072064-85072066 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10086739 | ANLN | cis | Brain Pons | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
