Variant report

Variant	rs1550215
Chromosome Location	chr8:85093121-85093122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10086739	0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10103882	0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10808859	0.84[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12546578	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1370417	0.83[AFR][1000 genomes]
rs1866087	0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2118320	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2196617	0.89[ASN][1000 genomes]
rs2196618	0.91[ASN][1000 genomes]
rs6473528	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821259	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv611646	chr8:85048690-85112377	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1550215	RALYL	cis	cerebellum	SCAN
rs1550215	FABP4	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85088800-85094000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:85092800-85093400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
3	chr8:85092800-85093600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:85092800-85094400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:85093000-85093200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:85093000-85093200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:85093000-85093400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:85093000-85093800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:85093000-85093800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links