Variant report
| Variant | rs1866087 |
|---|---|
| Chromosome Location | chr8:85071289-85071290 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr8:85071182-85071504 | HepG2 | liver: | n/a | chr8:85071394-85071411 chr8:85071301-85071312 chr8:85071300-85071314 |
| 2 | MAFK | chr8:85071213-85071413 | HepG2 | liver: | n/a | chr8:85071394-85071411 chr8:85071301-85071312 chr8:85071300-85071314 |
| 3 | MAFK | chr8:85071227-85071437 | IMR90 | lung: | n/a | chr8:85071394-85071411 chr8:85071301-85071312 chr8:85071300-85071314 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TPM3P3 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10086739 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10103882 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10808859 | 0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12546578 | 0.95[JPT][hapmap] |
| rs12681393 | 0.83[AFR][1000 genomes] |
| rs1370417 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1550215 | 0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs7815593 | 0.95[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753846 | chr8:84637092-85239703 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv611646 | chr8:85048690-85112377 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1866087 | ANLN | cis | Brain Pons | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
