Variant report

Variant	rs12681393
Chromosome Location	chr8:85033078-85033079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10086739	1.00[YRI][hapmap]
rs10103882	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10504802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738143	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808859	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12681446	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269443	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370417	0.86[AFR][1000 genomes]
rs1550215	1.00[YRI][hapmap]
rs1866087	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7815593	1.00[YRI][hapmap]
rs7821100	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969208	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85032000-85033200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:85032400-85033200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:85032400-85035800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:85032400-85035800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:85032600-85034400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:85032600-85034600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:85032600-85035800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:85032800-85033800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:85032800-85034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:85033000-85035000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links