Variant report

Variant	rs1008719
Chromosome Location	chr10:90637420-90637421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90634887..90637855-chr10:90638729..90640945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138134	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10887870	0.82[EUR][1000 genomes]
rs11202897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11202898	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202899	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202901	0.80[AMR][1000 genomes]
rs11202902	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202906	0.80[EUR][1000 genomes]
rs11591231	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11596205	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1214564	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12241401	0.95[EUR][1000 genomes]
rs12254856	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12267680	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2119685	0.80[EUR][1000 genomes]
rs2439707	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2481918	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41284106	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41317244	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs45493098	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56104559	0.96[EUR][1000 genomes]
rs56228317	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56268252	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57807025	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59737591	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66478243	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7085698	0.82[EUR][1000 genomes]
rs7090631	0.82[EUR][1000 genomes]
rs7098235	0.82[EUR][1000 genomes]
rs72809310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72809311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72809314	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72809318	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72809335	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72809337	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72809342	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7915393	0.81[EUR][1000 genomes]
rs988584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90630200-90639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:90634800-90638000	Weak transcription	NHLF	lung
3	chr10:90635000-90639200	Weak transcription	Fetal Heart	heart
4	chr10:90635000-90639400	Weak transcription	Ovary	ovary
5	chr10:90636400-90638200	Enhancers	Dnd41	blood
6	chr10:90636800-90639200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:90637200-90637600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:90637200-90637600	Enhancers	Fetal Thymus	thymus
9	chr10:90637200-90639200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:90637400-90637800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:90637400-90639200	Enhancers	Primary T cells from cord blood	blood
12	chr10:90637400-90639200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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