Variant report

Variant	rs1214564
Chromosome Location	chr10:90604224-90604225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008719	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11202897	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs11202898	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs11202899	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs11202902	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11202906	0.83[CEU][hapmap]
rs11202907	0.83[CEU][hapmap]
rs11591231	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs11596205	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12241401	0.88[EUR][1000 genomes]
rs12254084	0.83[CEU][hapmap]
rs12254856	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12267680	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17114327	0.82[CEU][hapmap]
rs2119685	0.83[CEU][hapmap]
rs2439707	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481918	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284106	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41317244	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45493098	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56104559	0.89[EUR][1000 genomes]
rs56228317	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56268252	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57807025	0.89[EUR][1000 genomes]
rs59737591	0.89[EUR][1000 genomes]
rs66478243	0.89[EUR][1000 genomes]
rs7078383	0.83[CEU][hapmap]
rs7085698	0.83[CEU][hapmap]
rs7090631	0.83[CEU][hapmap]
rs7098235	0.83[CEU][hapmap]
rs72809310	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72809311	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72809314	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72809318	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72809335	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72809337	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72809342	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7897521	0.83[CEU][hapmap]
rs7915393	0.83[CEU][hapmap]
rs988584	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90578000-90607200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:90578600-90611200	Weak transcription	Esophagus	oesophagus
3	chr10:90589000-90608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90598800-90608000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:90599600-90605000	Weak transcription	Gastric	stomach
6	chr10:90601400-90604800	Weak transcription	NHEK	skin
7	chr10:90601400-90608200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:90601600-90604400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:90601600-90606000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:90604000-90605000	Weak transcription	Stomach Mucosa	stomach

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