Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10087280	0.85[ASN][1000 genomes]
rs10098707	0.82[ASN][1000 genomes]
rs10110147	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10110839	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10112025	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10113165	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11774421	0.85[ASN][1000 genomes]
rs11985324	0.85[ASN][1000 genomes]
rs11985893	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11992271	0.85[ASN][1000 genomes]
rs11995181	0.82[ASN][1000 genomes]
rs11997525	0.84[ASN][1000 genomes]
rs16937564	0.82[ASN][1000 genomes]
rs1910252	0.82[ASN][1000 genomes]
rs2047787	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28516085	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4554493	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7006329	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639043	0.85[ASN][1000 genomes]
rs7817656	0.85[ASN][1000 genomes]
rs7825135	0.84[ASN][1000 genomes]
rs931764	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43361400-43362200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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