Variant report

Variant	rs10098707
Chromosome Location	chr8:49424260-49424261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49418954..49422550-chr8:49424056..49426532,3	MCF-7	breast:
3	chr8:49423563..49425293-chr8:49427104..49428839,2	MCF-7	breast:
4	chr8:49419085..49420617-chr8:49424139..49426156,2	K562	blood:
5	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10087276	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10087280	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10087665	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10088243	0.82[ASN][1000 genomes]
rs10092171	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10094801	0.89[CEU][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10097989	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10110147	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10110839	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10112025	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10113165	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10282993	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10957175	0.88[JPT][hapmap];1.00[MEX][hapmap]
rs1160606	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11774421	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11985324	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11985893	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11992271	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11995181	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997525	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1393550	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16937564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937767	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16937921	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16938118	0.88[JPT][hapmap];0.94[MEX][hapmap]
rs1910252	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976450	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2047787	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2200083	0.88[JPT][hapmap]
rs2200084	0.94[JPT][hapmap]
rs2279300	0.90[MEX][hapmap]
rs2279301	0.90[MEX][hapmap]
rs2279302	0.90[MEX][hapmap]
rs2384925	0.88[JPT][hapmap];1.00[MEX][hapmap]
rs28507516	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28516085	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28689821	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891639	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2891641	0.88[JPT][hapmap]
rs4554493	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5001149	0.89[CEU][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55851597	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57846507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471906	0.83[JPT][hapmap]
rs6981394	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6990833	0.88[JPT][hapmap];0.94[MEX][hapmap]
rs6998738	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7006329	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7012665	0.80[CHB][hapmap];0.94[MEX][hapmap]
rs7016759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639043	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639047	0.81[EUR][1000 genomes]
rs7817656	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7818323	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs7825135	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868444	0.89[CEU][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs931764	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs970214	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49414600-49427000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:49415800-49425200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:49418800-49426200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:49421400-49425800	Weak transcription	NHDF-Ad	bronchial
5	chr8:49422600-49426000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:49422600-49426200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:49422800-49426800	Weak transcription	Fetal Kidney	kidney
8	chr8:49423000-49426200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:49423200-49426600	Weak transcription	Adipose Nuclei	Adipose
10	chr8:49423400-49426000	Weak transcription	Fetal Lung	lung
11	chr8:49423400-49426200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49423400-49426200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:49423400-49426200	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:49423400-49426400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:49423400-49426600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:49423400-49426600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:49423600-49426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:49424200-49424800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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