Variant report

Variant	rs7818323
Chromosome Location	chr8:49426133-49426134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49425248..49427508-chr8:49492195..49495159,2	MCF-7	breast:
3	chr8:49418954..49422550-chr8:49424056..49426532,3	MCF-7	breast:
4	chr8:49419085..49420617-chr8:49424139..49426156,2	K562	blood:
5	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:
6	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
7	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:
8	chr8:49425401..49427959-chr8:49613311..49616115,2	K562	blood:
9	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:
10	chr8:49416623..49418414-chr8:49426088..49428237,3	MCF-7	breast:
11	chr8:49426108..49428162-chr8:49531601..49534476,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253455	Chromatin interaction
ENSG00000253702	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087276	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10089933	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091807	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096760	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10104817	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107213	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957084	0.81[EUR][1000 genomes]
rs11990598	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12386841	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13263338	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265552	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281995	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1910251	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279300	0.83[LWK][hapmap]
rs2279301	0.83[LWK][hapmap]
rs2279302	0.83[LWK][hapmap]
rs28689821	0.81[AFR][1000 genomes]
rs2891637	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35023025	0.90[ASN][1000 genomes]
rs6471788	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6984699	0.81[EUR][1000 genomes]
rs6988484	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990833	0.94[ASW][hapmap];0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993458	0.81[EUR][1000 genomes]
rs7000226	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7012665	0.94[ASW][hapmap];0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7013462	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014106	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830050	0.81[EUR][1000 genomes]
rs9298007	0.84[EUR][1000 genomes]
rs937651	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949635	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9987211	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49414600-49427000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:49418800-49426200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49422600-49426200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:49422800-49426800	Weak transcription	Fetal Kidney	kidney
5	chr8:49423000-49426200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:49423200-49426600	Weak transcription	Adipose Nuclei	Adipose
7	chr8:49423400-49426200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49423400-49426200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:49423400-49426200	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:49423400-49426400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:49423400-49426600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:49423400-49426600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:49423600-49426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:49425000-49426200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:49425000-49426400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:49425000-49427200	Weak transcription	Gastric	stomach
17	chr8:49425200-49426400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:49425200-49426400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:49425400-49426400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:49425800-49426200	Active TSS	NH-A	brain
21	chr8:49425800-49426400	Enhancers	Hela-S3	cervix
22	chr8:49425800-49426400	Enhancers	NHDF-Ad	bronchial
23	chr8:49425800-49426400	Enhancers	Osteobl	bone
24	chr8:49425800-49426800	Enhancers	Fetal Heart	heart
25	chr8:49426000-49426400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:49426000-49426400	Enhancers	Colon Smooth Muscle	Colon
27	chr8:49426000-49426400	Enhancers	HSMM	muscle
28	chr8:49426000-49426800	Enhancers	Fetal Lung	lung
29	chr8:49426000-49426800	Enhancers	HMEC	breast

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