Variant report

Variant	rs10091807
Chromosome Location	chr8:49409929-49409930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10087276	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10089933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10094801	0.83[JPT][hapmap]
rs10096760	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10104817	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957084	0.83[EUR][1000 genomes]
rs10957175	0.95[MEX][hapmap]
rs11990598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12386841	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13263338	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265552	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281995	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16938118	0.89[MEX][hapmap]
rs1910251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200084	0.82[JPT][hapmap]
rs2279300	0.81[LWK][hapmap];0.95[MEX][hapmap]
rs2279301	0.81[LWK][hapmap];0.95[MEX][hapmap]
rs2279302	0.81[LWK][hapmap];0.95[MEX][hapmap]
rs2384925	0.95[MEX][hapmap]
rs2891637	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35023025	0.90[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471788	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471906	0.83[JPT][hapmap]
rs6984699	0.83[EUR][1000 genomes]
rs6988484	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990833	0.89[ASW][hapmap];0.95[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993458	0.83[EUR][1000 genomes]
rs7000226	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7012665	0.89[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7013462	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014106	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7818323	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830050	0.83[EUR][1000 genomes]
rs868444	0.83[JPT][hapmap]
rs9298007	0.87[EUR][1000 genomes]
rs937651	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949635	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9987211	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49407000-49413800	Weak transcription	NH-A	brain
2	chr8:49407200-49413400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:49407200-49413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:49407200-49413400	Weak transcription	A549	lung
5	chr8:49407400-49413400	Weak transcription	Osteobl	bone
6	chr8:49409200-49413400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links