Variant report

Variant	rs6471906
Chromosome Location	chr8:49529985-49529986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:49529670-49530053	NB4	blood:	n/a	chr8:49529828-49529838

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253455	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10957175	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16938118	0.90[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs2200083	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2200084	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2279300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2279301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2279302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs2291225	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2384925	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2891641	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34358325	0.82[AFR][1000 genomes]
rs4422800	0.80[AFR][1000 genomes]
rs60342397	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6990833	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs7010209	0.80[AFR][1000 genomes]
rs7012665	0.82[CEU][hapmap]
rs733192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298043	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9298044	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49518600-49532000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:49527400-49532000	Enhancers	NHDF-Ad	bronchial
4	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:49527800-49532000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:49528400-49530000	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:49528400-49530400	Enhancers	Ovary	ovary
8	chr8:49528800-49530200	Enhancers	Fetal Lung	lung
9	chr8:49528800-49532000	Enhancers	Fetal Stomach	stomach
10	chr8:49529000-49530000	Enhancers	HSMMtube	muscle
11	chr8:49529000-49530200	Enhancers	Adipose Nuclei	Adipose
12	chr8:49529000-49530200	Enhancers	NHLF	lung
13	chr8:49529000-49530600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:49529000-49530800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:49529000-49532000	Enhancers	Osteobl	bone
16	chr8:49529000-49532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:49529000-49532200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:49529000-49532200	Enhancers	HSMM	muscle
19	chr8:49529000-49532400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:49529000-49532400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:49529200-49530200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:49529200-49531600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:49529200-49532000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:49529200-49532600	Weak transcription	Right Ventricle	heart
25	chr8:49529600-49530200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:49529600-49530200	Enhancers	Colon Smooth Muscle	Colon
27	chr8:49529600-49530200	Enhancers	HMEC	breast
28	chr8:49529600-49531200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:49529600-49532200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:49529800-49530000	Enhancers	Left Ventricle	heart
31	chr8:49529800-49530000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr8:49529800-49532000	Weak transcription	Right Atrium	heart

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