Variant report

Variant	rs2384925
Chromosome Location	chr8:49529028-49529029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10094801	0.83[JPT][hapmap]
rs10957175	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938118	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279300	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2279301	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2279302	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap]
rs2279303	0.82[YRI][hapmap]
rs2291225	0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2891641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471906	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6990833	0.86[GIH][hapmap];0.95[MEX][hapmap]
rs7012665	0.82[GIH][hapmap];0.94[MEX][hapmap]
rs733192	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs868444	0.83[JPT][hapmap]
rs9298043	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298044	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2384925	ZNF655	trans	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49518400-49529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:49518600-49532000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49527400-49532000	Enhancers	NHDF-Ad	bronchial
5	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:49527800-49529200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:49527800-49532000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:49528400-49529600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49528400-49530000	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:49528400-49530400	Enhancers	Ovary	ovary
11	chr8:49528800-49530200	Enhancers	Fetal Lung	lung
12	chr8:49528800-49532000	Enhancers	Fetal Stomach	stomach
13	chr8:49529000-49529200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:49529000-49529200	Bivalent Enhancer	Fetal Heart	heart
15	chr8:49529000-49529200	Enhancers	Right Ventricle	heart
16	chr8:49529000-49529200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr8:49529000-49529400	Enhancers	Left Ventricle	heart
18	chr8:49529000-49529600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:49529000-49530000	Enhancers	HSMMtube	muscle
20	chr8:49529000-49530200	Enhancers	Adipose Nuclei	Adipose
21	chr8:49529000-49530200	Enhancers	NHLF	lung
22	chr8:49529000-49530600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr8:49529000-49530800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:49529000-49532000	Enhancers	Osteobl	bone
25	chr8:49529000-49532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:49529000-49532200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:49529000-49532200	Enhancers	HSMM	muscle
28	chr8:49529000-49532400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:49529000-49532400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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