Variant report

Variant	rs733192
Chromosome Location	chr8:49534548-49534549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:52)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:52 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:49534363-49534667	A549	lung:	n/a	n/a
2	FOS	chr8:49534276-49534761	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr8:49533793-49534572	MCF10A-Er-Src	breast:	n/a	n/a
4	SP1	chr8:49534341-49534755	A549	lung:	n/a	n/a
5	CEBPB	chr8:49534407-49534759	A549	lung:	n/a	n/a
6	ESR1	chr8:49534330-49534619	T-47D	breast:	n/a	n/a
7	MAX	chr8:49534235-49534643	A549	lung:	n/a	n/a
8	CTCF	chr8:49534460-49534610	NHEK	skin:	n/a	n/a
9	RAD21	chr8:49534227-49534641	Hela-S3	cervix:	n/a	n/a
10	FOSL2	chr8:49534298-49534699	A549	lung:	n/a	n/a
11	GATA3	chr8:49534157-49534835	MCF-7	breast:	n/a	n/a
12	FOS	chr8:49534394-49534676	MCF10A-Er-Src	breast:	n/a	n/a
13	CTCF	chr8:49534500-49534650	HCM	heart:	n/a	n/a
14	CTCF	chr8:49534400-49534550	HCM	heart:	n/a	n/a
15	RAD21	chr8:49534335-49534731	IMR90	lung:	n/a	n/a
16	STAT3	chr8:49534142-49534682	MCF10A-Er-Src	breast:	n/a	n/a
17	STAT3	chr8:49534139-49534735	MCF10A-Er-Src	breast:	n/a	n/a
18	CEBPB	chr8:49534342-49534760	IMR90	lung:	n/a	n/a
19	CTCF	chr8:49534400-49534550	BJ	skin:	n/a	n/a
20	CTCF	chr8:49534400-49534550	Hela-S3	cervix:	n/a	n/a
21	MYC	chr8:49534278-49534619	MCF10A-Er-Src	breast:	n/a	n/a
22	TEAD4	chr8:49534308-49534716	A549	lung:	n/a	n/a
23	EP300	chr8:49534196-49534779	MCF-7	breast:	n/a	n/a
24	ESR1	chr8:49534303-49534678	T-47D	breast:	n/a	n/a
25	GATA3	chr8:49534099-49534877	A549	lung:	n/a	n/a
26	STAT3	chr8:49534136-49534649	MCF10A-Er-Src	breast:	n/a	n/a
27	CTCF	chr8:49534460-49534610	HVMF	connective:	n/a	n/a
28	CTCF	chr8:49534440-49534590	AG10803	skin:	n/a	n/a
29	RCOR1	chr8:49534264-49534642	Hela-S3	cervix:	n/a	n/a
30	CTCF	chr8:49534400-49534550	HPF	lung:	n/a	n/a
31	MAX	chr8:49534088-49534757	A549	lung:	n/a	n/a
32	E2F4	chr8:49534100-49534666	MCF10A-Er-Src	breast:	n/a	n/a
33	CEBPB	chr8:49534314-49534758	A549	lung:	n/a	n/a
34	ESR1	chr8:49534357-49534622	T-47D	breast:	n/a	n/a
35	CTCF	chr8:49534400-49534550	AG09319	gingival:	n/a	n/a
36	MYC	chr8:49534208-49534668	MCF10A-Er-Src	breast:	n/a	n/a
37	RFX5	chr8:49534371-49534602	Hela-S3	cervix:	n/a	n/a
38	TCF12	chr8:49534186-49534766	A549	lung:	n/a	n/a
39	CEBPB	chr8:49534187-49534779	MCF-7	breast:	n/a	n/a
40	FOS	chr8:49534273-49534764	MCF10A-Er-Src	breast:	n/a	n/a
41	FOXM1	chr8:49534222-49534829	MCF-7	breast:	n/a	n/a
42	GATA3	chr8:49534328-49534717	T-47D	breast:	n/a	n/a
43	NR2F2	chr8:49534149-49534754	MCF-7	breast:	n/a	n/a
44	SP1	chr8:49534245-49534759	A549	lung:	n/a	n/a
45	RAD21	chr8:49534159-49534685	A549	lung:	n/a	n/a
46	FOS	chr8:49534346-49534734	MCF10A-Er-Src	breast:	n/a	n/a
47	CTCF	chr8:49534400-49534550	AG04450	lung:	n/a	n/a
48	CEBPB	chr8:49534253-49534762	Hela-S3	cervix:	n/a	n/a
49	NR3C1	chr8:49534236-49534854	A549	lung:	n/a	n/a
50	SMC3	chr8:49534226-49534640	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000253702	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10957175	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16938118	0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2200083	0.91[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs2200084	0.91[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2279300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2291225	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2384925	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2891641	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34358325	0.88[AFR][1000 genomes]
rs4422800	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs60342397	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6990833	0.82[CEU][hapmap]
rs7010209	0.86[AFR][1000 genomes]
rs7012665	0.82[CEU][hapmap]
rs9298043	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9298044	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49531800-49534600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:49531800-49534600	Enhancers	NH-A	brain
4	chr8:49531800-49534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49532000-49534600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:49532000-49534600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49532000-49534800	Enhancers	Placenta	Placenta
8	chr8:49532200-49534600	Enhancers	HMEC	breast
9	chr8:49532400-49534600	Enhancers	Brain Germinal Matrix	brain
10	chr8:49532400-49534600	Enhancers	Fetal Lung	lung
11	chr8:49532400-49534600	Enhancers	A549	lung
12	chr8:49533000-49537200	Weak transcription	HUVEC	blood vessel
13	chr8:49533200-49534600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr8:49533200-49536000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:49533600-49534600	Enhancers	Gastric	stomach
16	chr8:49533600-49534600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr8:49533600-49534600	Enhancers	Hela-S3	cervix
18	chr8:49533600-49534600	Enhancers	HSMMtube	muscle
19	chr8:49533600-49534800	Enhancers	Ovary	ovary
20	chr8:49533600-49534800	Enhancers	NHLF	lung
21	chr8:49533600-49535000	Enhancers	Fetal Muscle Leg	muscle
22	chr8:49533600-49535200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:49533800-49534600	Enhancers	Adipose Nuclei	Adipose
24	chr8:49533800-49534600	Enhancers	Fetal Stomach	stomach
25	chr8:49533800-49534600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:49533800-49534800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:49533800-49534800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:49533800-49535200	Enhancers	Fetal Muscle Trunk	muscle
29	chr8:49533800-49535400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:49533800-49537600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:49534000-49534600	Enhancers	Colon Smooth Muscle	Colon
32	chr8:49534000-49534600	Enhancers	Fetal Brain Male	brain
33	chr8:49534000-49536600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:49534000-49538600	Weak transcription	Fetal Kidney	kidney
35	chr8:49534200-49534600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:49534200-49534600	Enhancers	Left Ventricle	heart
37	chr8:49534200-49534800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:49534200-49535800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:49534400-49534600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:49534400-49534600	Enhancers	HSMM	muscle
41	chr8:49534400-49534600	Flanking Active TSS	NHDF-Ad	bronchial
42	chr8:49534400-49534600	Enhancers	Osteobl	bone
43	chr8:49534400-49535200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:49534400-49535400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr8:49534400-49535400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:49534400-49536800	Weak transcription	Right Ventricle	heart
47	chr8:49534400-49537200	Weak transcription	Spleen	Spleen
48	chr8:49534400-49537400	Weak transcription	Right Atrium	heart
49	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea

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