Variant report

Variant	rs7010209
Chromosome Location	chr8:49535867-49535868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2279300	0.86[AFR][1000 genomes]
rs2279301	0.86[AFR][1000 genomes]
rs2279303	0.88[AMR][1000 genomes]
rs2291225	0.83[AFR][1000 genomes]
rs34358325	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4614022	0.86[AMR][1000 genomes]
rs60342397	0.82[AFR][1000 genomes]
rs6471906	0.80[AFR][1000 genomes]
rs733192	0.86[AFR][1000 genomes]
rs9298044	0.81[AFR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49533000-49537200	Weak transcription	HUVEC	blood vessel
3	chr8:49533200-49536000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:49533800-49537600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:49534000-49536600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:49534000-49538600	Weak transcription	Fetal Kidney	kidney
7	chr8:49534400-49536800	Weak transcription	Right Ventricle	heart
8	chr8:49534400-49537200	Weak transcription	Spleen	Spleen
9	chr8:49534400-49537400	Weak transcription	Right Atrium	heart
10	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
11	chr8:49534600-49536800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:49534600-49537000	Weak transcription	Adipose Nuclei	Adipose
13	chr8:49534600-49537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:49534600-49537400	Weak transcription	Left Ventricle	heart
15	chr8:49534600-49537400	Weak transcription	Lung	lung
16	chr8:49534600-49538600	Weak transcription	Fetal Lung	lung
17	chr8:49534600-49538800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:49534600-49538800	Weak transcription	Hela-S3	cervix
19	chr8:49534600-49539000	Weak transcription	A549	lung
20	chr8:49534600-49539800	Weak transcription	HSMM	muscle
21	chr8:49534600-49539800	Weak transcription	NH-A	brain
22	chr8:49534600-49539800	Weak transcription	Osteobl	bone
23	chr8:49534600-49540000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:49534600-49543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:49534800-49537000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:49534800-49537400	Weak transcription	Placenta	Placenta
27	chr8:49534800-49539000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:49534800-49539600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:49534800-49539800	Weak transcription	NHLF	lung
30	chr8:49534800-49540000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:49535000-49536000	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:49535200-49536200	Weak transcription	NHDF-Ad	bronchial
33	chr8:49535200-49539800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:49535200-49541000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:49535200-49541600	Weak transcription	Gastric	stomach
36	chr8:49535400-49537600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:49535800-49536400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr8:49535800-49537000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:49535800-49537600	Enhancers	Cortex derived primary cultured neurospheres	brain

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