Variant report

Variant	rs34358325
Chromosome Location	chr8:49534747-49534748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:49534276-49534761	MCF10A-Er-Src	breast:	n/a	n/a
2	SP1	chr8:49534341-49534755	A549	lung:	n/a	n/a
3	CEBPB	chr8:49534407-49534759	A549	lung:	n/a	n/a
4	GATA3	chr8:49534157-49534835	MCF-7	breast:	n/a	n/a
5	CEBPB	chr8:49534342-49534760	IMR90	lung:	n/a	n/a
6	EP300	chr8:49534196-49534779	MCF-7	breast:	n/a	n/a
7	GATA3	chr8:49534099-49534877	A549	lung:	n/a	n/a
8	MAX	chr8:49534088-49534757	A549	lung:	n/a	n/a
9	CEBPB	chr8:49534314-49534758	A549	lung:	n/a	n/a
10	TCF12	chr8:49534186-49534766	A549	lung:	n/a	n/a
11	CEBPB	chr8:49534187-49534779	MCF-7	breast:	n/a	n/a
12	FOS	chr8:49534273-49534764	MCF10A-Er-Src	breast:	n/a	n/a
13	FOXM1	chr8:49534222-49534829	MCF-7	breast:	n/a	n/a
14	NR2F2	chr8:49534149-49534754	MCF-7	breast:	n/a	n/a
15	SP1	chr8:49534245-49534759	A549	lung:	n/a	n/a
16	CEBPB	chr8:49534253-49534762	Hela-S3	cervix:	n/a	n/a
17	NR3C1	chr8:49534236-49534854	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000253702	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2279300	0.88[AFR][1000 genomes]
rs2279301	0.88[AFR][1000 genomes]
rs2291225	0.85[AFR][1000 genomes]
rs28496694	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4422800	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60342397	0.84[AFR][1000 genomes]
rs6471906	0.82[AFR][1000 genomes]
rs7010209	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733192	0.88[AFR][1000 genomes]
rs9298044	0.82[AFR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49531800-49534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:49532000-49534800	Enhancers	Placenta	Placenta
4	chr8:49533000-49537200	Weak transcription	HUVEC	blood vessel
5	chr8:49533200-49536000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:49533600-49534800	Enhancers	Ovary	ovary
7	chr8:49533600-49534800	Enhancers	NHLF	lung
8	chr8:49533600-49535000	Enhancers	Fetal Muscle Leg	muscle
9	chr8:49533600-49535200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:49533800-49534800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:49533800-49534800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:49533800-49535200	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:49533800-49535400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:49533800-49537600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:49534000-49536600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:49534000-49538600	Weak transcription	Fetal Kidney	kidney
17	chr8:49534200-49534800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:49534200-49535800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:49534400-49535200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:49534400-49535400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:49534400-49535400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:49534400-49536800	Weak transcription	Right Ventricle	heart
23	chr8:49534400-49537200	Weak transcription	Spleen	Spleen
24	chr8:49534400-49537400	Weak transcription	Right Atrium	heart
25	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
26	chr8:49534600-49535000	Weak transcription	Gastric	stomach
27	chr8:49534600-49535200	Enhancers	NHDF-Ad	bronchial
28	chr8:49534600-49536800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:49534600-49537000	Weak transcription	Adipose Nuclei	Adipose
30	chr8:49534600-49537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:49534600-49537400	Weak transcription	Left Ventricle	heart
32	chr8:49534600-49537400	Weak transcription	Lung	lung
33	chr8:49534600-49538600	Weak transcription	Fetal Lung	lung
34	chr8:49534600-49538800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:49534600-49538800	Weak transcription	Hela-S3	cervix
36	chr8:49534600-49539000	Weak transcription	A549	lung
37	chr8:49534600-49539800	Weak transcription	HSMM	muscle
38	chr8:49534600-49539800	Weak transcription	NH-A	brain
39	chr8:49534600-49539800	Weak transcription	Osteobl	bone
40	chr8:49534600-49540000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:49534600-49543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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