Variant report

Variant	rs10957175
Chromosome Location	chr8:49528165-49528166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10094801	0.83[JPT][hapmap]
rs16938118	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279300	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2279301	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2279302	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap]
rs2291225	0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2384925	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496694	0.81[AFR][1000 genomes]
rs2891641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471906	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6990833	0.82[GIH][hapmap];0.95[MEX][hapmap]
rs7012665	0.94[MEX][hapmap]
rs733192	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs868444	0.83[JPT][hapmap]
rs9298043	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298044	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10957175	ZNF655	trans	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49513400-49528800	Weak transcription	Fetal Lung	lung
2	chr8:49518400-49529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49518600-49532000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:49519800-49529000	Weak transcription	NHLF	lung
5	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:49527000-49529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49527400-49532000	Enhancers	NHDF-Ad	bronchial
8	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
9	chr8:49527600-49529000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:49527800-49528800	Weak transcription	Fetal Stomach	stomach
11	chr8:49527800-49529200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:49527800-49532000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:49528000-49528400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:49528000-49528400	Weak transcription	Ovary	ovary
15	chr8:49528000-49529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:49528000-49529000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:49528000-49529000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:49528000-49529000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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