Variant report

Variant	rs16938118
Chromosome Location	chr8:49514893-49514894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094801	0.83[JPT][hapmap]
rs10957175	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200083	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200084	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2279300	0.90[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2279301	0.90[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2279302	0.90[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2291225	0.90[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2384925	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2891641	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471906	0.90[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs6990833	0.82[GIH][hapmap];0.89[MEX][hapmap]
rs7012665	0.88[MEX][hapmap]
rs733192	0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs868444	0.83[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs9298043	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9298044	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16938118	ZNF655	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49495600-49519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49504600-49518200	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:49507000-49518200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:49513200-49516000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49513200-49516600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:49513400-49528800	Weak transcription	Fetal Lung	lung
7	chr8:49514600-49517400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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