Variant report

Variant	rs2200083
Chromosome Location	chr8:49527757-49527758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094801	0.84[JPT][hapmap]
rs10957175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938118	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2200084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279300	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2279301	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2279302	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2279303	0.84[YRI][hapmap]
rs2291225	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs2384925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5001149	0.84[JPT][hapmap]
rs6471906	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs733192	0.91[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs868444	0.84[JPT][hapmap]
rs9298043	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298044	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49513400-49528800	Weak transcription	Fetal Lung	lung
2	chr8:49518400-49529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49518600-49532000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:49519800-49529000	Weak transcription	NHLF	lung
5	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:49527000-49529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49527400-49528000	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:49527400-49532000	Enhancers	NHDF-Ad	bronchial
9	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:49527600-49528000	Enhancers	Ovary	ovary
11	chr8:49527600-49529000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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