Variant report

Variant	rs12386841
Chromosome Location	chr8:49382708-49382709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10089933	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10091807	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10096760	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10096946	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10104817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107213	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10108258	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10282826	0.82[EUR][1000 genomes]
rs10957084	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11989167	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11990598	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13263338	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13265552	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13281995	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510931	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16936986	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1910251	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891637	0.80[ASN][1000 genomes]
rs35023025	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471766	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6471788	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68052435	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6980967	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6983687	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6984699	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6988484	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6990833	0.95[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs6993458	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7000226	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7012665	0.95[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7013462	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014106	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017438	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7818323	1.00[CEU][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827432	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7830050	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7838570	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs871920	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9298007	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs937651	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs949635	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs955819	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9987211	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49378800-49383000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:49379200-49384800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:49379400-49384200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:49380200-49390400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49380400-49383000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:49380400-49385600	Weak transcription	Placenta	Placenta
7	chr8:49380600-49383000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:49380600-49383200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49380600-49383600	Weak transcription	Ovary	ovary
10	chr8:49380800-49383000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:49380800-49383000	Weak transcription	NHEK	skin
12	chr8:49380800-49383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:49380800-49386400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:49380800-49386400	Weak transcription	Pancreas	Pancrea
15	chr8:49381400-49383000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:49381800-49384400	Enhancers	HUVEC	blood vessel
17	chr8:49382000-49383000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:49382000-49384600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:49382200-49387200	Enhancers	HMEC	breast
20	chr8:49382400-49383000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:49382600-49383600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:49382600-49385000	Enhancers	HSMM	muscle

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