Variant report

Variant	rs871920
Chromosome Location	chr8:49312284-49312285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49311649..49313172-chr8:49313424..49316373,2	MCF-7	breast:
2	chr8:49306975..49309919-chr8:49310185..49313879,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10096760	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10096946	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10104817	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10108258	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10282826	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282853	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504063	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957084	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11786138	0.80[AFR][1000 genomes]
rs11989167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11989429	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12334582	0.80[ASN][1000 genomes]
rs12334798	0.80[ASN][1000 genomes]
rs12334834	0.80[ASN][1000 genomes]
rs12386841	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12707987	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13259359	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13268799	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13281995	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1510931	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16936986	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34639799	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471752	0.84[ASN][1000 genomes]
rs6471766	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471788	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68052435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6983687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984699	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990833	0.82[CEU][hapmap]
rs6993458	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002733	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7012665	0.82[CEU][hapmap]
rs7013462	0.81[EUR][1000 genomes]
rs7014106	0.81[EUR][1000 genomes]
rs7017438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816649	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7818323	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs7827432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7830050	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9298007	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs949635	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs955467	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs955819	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792273	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792381	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987211	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49307000-49315200	Enhancers	Fetal Brain Male	brain
2	chr8:49308800-49313000	Enhancers	Placenta	Placenta
3	chr8:49308800-49313200	Enhancers	Spleen	Spleen
4	chr8:49308800-49315200	Enhancers	Fetal Heart	heart
5	chr8:49309000-49312600	Enhancers	NHLF	lung
6	chr8:49309000-49314200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:49309600-49315400	Enhancers	Ovary	ovary
8	chr8:49309800-49312600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:49309800-49312800	Enhancers	Fetal Kidney	kidney
10	chr8:49309800-49320200	Weak transcription	Aorta	Aorta
11	chr8:49310000-49312400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:49310000-49312600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:49310000-49312800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:49310000-49313000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:49310000-49313000	Enhancers	Osteobl	bone
16	chr8:49310000-49313200	Enhancers	Fetal Stomach	stomach
17	chr8:49310000-49313800	Enhancers	Adipose Nuclei	Adipose
18	chr8:49310000-49314000	Enhancers	Left Ventricle	heart
19	chr8:49310000-49315200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:49310000-49316000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr8:49310200-49312400	Enhancers	HSMMtube	muscle
22	chr8:49310200-49313000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr8:49310200-49315000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:49310200-49315000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:49310400-49313600	Enhancers	Fetal Muscle Trunk	muscle
26	chr8:49310400-49315400	Enhancers	Fetal Muscle Leg	muscle
27	chr8:49310600-49313200	Enhancers	Right Atrium	heart
28	chr8:49311000-49312400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:49311000-49312800	Weak transcription	Right Ventricle	heart
30	chr8:49311000-49313800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:49311000-49314400	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:49311000-49315000	Weak transcription	Esophagus	oesophagus
33	chr8:49311000-49319400	Weak transcription	Gastric	stomach
34	chr8:49311000-49320000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:49311200-49312600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr8:49311200-49312800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:49311200-49318800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:49311400-49313000	Enhancers	HUVEC	blood vessel
39	chr8:49311400-49313800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:49311600-49312600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:49311600-49312600	Weak transcription	Lung	lung
42	chr8:49311800-49312600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr8:49312200-49312400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:49312200-49312400	Enhancers	Stomach Mucosa	stomach
45	chr8:49312200-49312600	Flanking Active TSS	Fetal Lung	lung
46	chr8:49312200-49312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:49312200-49312800	Enhancers	NH-A	brain
48	chr8:49312200-49313600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:49312200-49315000	Weak transcription	Fetal Thymus	thymus

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