Variant report

Variant	rs68052435
Chromosome Location	chr8:49334825-49334826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49332040..49335139-chr8:49335695..49338552,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10089933	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10096760	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10096946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104817	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10108258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282826	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282853	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504063	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957084	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11786138	0.83[AFR][1000 genomes]
rs11989167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989429	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11990598	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12386841	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12707987	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255660	0.80[AFR][1000 genomes]
rs13259359	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13268799	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13273493	0.84[AFR][1000 genomes]
rs13281995	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1510931	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34639799	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3938078	0.82[AFR][1000 genomes]
rs6471752	0.83[ASN][1000 genomes]
rs6471766	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471788	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6980967	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984699	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993458	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7002733	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7013286	0.80[AFR][1000 genomes]
rs7013462	0.83[EUR][1000 genomes]
rs7014106	0.83[EUR][1000 genomes]
rs7017438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816649	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7830050	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884553	0.81[AFR][1000 genomes]
rs9298007	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs949635	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs955467	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955819	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9792273	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9792381	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9987211	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49332200-49335000	Weak transcription	Fetal Stomach	stomach
2	chr8:49332400-49340200	Weak transcription	Fetal Intestine Small	intestine
3	chr8:49332800-49338600	Weak transcription	Spleen	Spleen
4	chr8:49333000-49335200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:49333400-49339800	Weak transcription	Pancreas	Pancrea
6	chr8:49333800-49341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:49334000-49335200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:49334000-49339800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:49334200-49335200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:49334200-49339800	Weak transcription	Right Atrium	heart
11	chr8:49334400-49339200	Weak transcription	Fetal Brain Female	brain
12	chr8:49334400-49339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:49334400-49339800	Weak transcription	Fetal Lung	lung
14	chr8:49334600-49335000	Enhancers	Fetal Brain Male	brain
15	chr8:49334600-49339400	Weak transcription	NHDF-Ad	bronchial
16	chr8:49334600-49339800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:49334600-49339800	Weak transcription	NHLF	lung
18	chr8:49334800-49335200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links