Variant report

Variant	rs884553
Chromosome Location	chr8:49346803-49346804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10957084	0.81[AFR][1000 genomes]
rs11786138	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11989167	0.83[AFR][1000 genomes]
rs13255660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13273493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16936986	0.83[AFR][1000 genomes]
rs3938078	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471766	0.81[AFR][1000 genomes]
rs68052435	0.81[AFR][1000 genomes]
rs6984699	0.85[AFR][1000 genomes]
rs6993458	0.91[AFR][1000 genomes]
rs7013286	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7830050	0.91[AFR][1000 genomes]
rs9298007	0.84[AFR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49343200-49347000	Enhancers	Fetal Muscle Trunk	muscle
2	chr8:49343400-49347200	Enhancers	Lung	lung
3	chr8:49343800-49347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
5	chr8:49344400-49347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:49344400-49347200	Enhancers	NHDF-Ad	bronchial
7	chr8:49344800-49347200	Weak transcription	Fetal Stomach	stomach
8	chr8:49345000-49352400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:49345600-49349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:49345600-49350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49345600-49350800	Weak transcription	Ovary	ovary
12	chr8:49345600-49351200	Weak transcription	Spleen	Spleen
13	chr8:49345800-49351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:49346000-49347800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:49346200-49347000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:49346200-49347400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:49346200-49350400	Weak transcription	Aorta	Aorta
18	chr8:49346400-49349400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:49346400-49349600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:49346400-49350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:49346400-49352400	Weak transcription	Adipose Nuclei	Adipose
22	chr8:49346800-49347000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:49346800-49347400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:49346800-49351200	Weak transcription	Fetal Lung	lung

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