Variant report

Variant	rs13255660
Chromosome Location	chr8:49339492-49339493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10096946	0.80[AFR][1000 genomes]
rs11786138	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989167	0.82[AFR][1000 genomes]
rs13273493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936986	0.82[AFR][1000 genomes]
rs3938078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471766	0.80[AFR][1000 genomes]
rs68052435	0.80[AFR][1000 genomes]
rs6993458	0.84[AFR][1000 genomes]
rs7013286	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830050	0.84[AFR][1000 genomes]
rs884553	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9298007	0.82[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49332400-49340200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49333400-49339800	Weak transcription	Pancreas	Pancrea
3	chr8:49333800-49341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:49334000-49339800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:49334200-49339800	Weak transcription	Right Atrium	heart
6	chr8:49334400-49339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:49334400-49339800	Weak transcription	Fetal Lung	lung
8	chr8:49334600-49339800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:49334600-49339800	Weak transcription	NHLF	lung
10	chr8:49335200-49340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:49335200-49340200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:49335200-49340200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:49338600-49340800	Enhancers	Spleen	Spleen
14	chr8:49339200-49340400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:49339200-49340400	Enhancers	Esophagus	oesophagus
16	chr8:49339200-49340800	Enhancers	Lung	lung
17	chr8:49339200-49341800	Enhancers	Fetal Brain Male	brain
18	chr8:49339200-49341800	Enhancers	Fetal Brain Female	brain
19	chr8:49339200-49342600	Enhancers	Fetal Muscle Trunk	muscle
20	chr8:49339400-49341800	Enhancers	Brain Substantia Nigra	brain
21	chr8:49339400-49342600	Enhancers	NHDF-Ad	bronchial
22	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle

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