Variant report

Variant	rs10504063
Chromosome Location	chr8:49289257-49289258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49286935..49290413-chr8:49291309..49294157,4	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10096946	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10108258	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10282826	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10282853	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10957084	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11989167	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989429	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12334582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12334798	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12334834	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12707987	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13259359	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13268799	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510931	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16936986	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34639799	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471752	0.80[ASN][1000 genomes]
rs6471766	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68052435	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6980967	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6983687	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6984699	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993458	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7002733	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013259	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7017438	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7816649	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7818323	0.82[YRI][hapmap]
rs7827432	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7830050	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7838570	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs871920	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955467	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955819	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9792273	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9792381	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49284200-49291000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49284200-49291400	Weak transcription	Fetal Kidney	kidney
3	chr8:49285000-49289800	Weak transcription	Fetal Lung	lung
4	chr8:49285600-49290000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:49285600-49292400	Enhancers	NHDF-Ad	bronchial
6	chr8:49286400-49289600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49286600-49292400	Weak transcription	Spleen	Spleen
8	chr8:49288000-49289800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49288000-49289800	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:49288000-49289800	Enhancers	NHLF	lung
11	chr8:49288000-49290400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:49288000-49290600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:49288000-49290600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:49288000-49290600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:49288000-49290600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:49288000-49290600	Enhancers	Osteobl	bone
17	chr8:49288000-49292400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:49288000-49292400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:49288200-49292600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:49288600-49290400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:49288600-49290400	Enhancers	NH-A	brain
22	chr8:49288600-49290600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:49288600-49290600	Enhancers	Placenta	Placenta
24	chr8:49288800-49289800	Weak transcription	Gastric	stomach
25	chr8:49288800-49290600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:49289000-49289600	Weak transcription	Stomach Mucosa	stomach
27	chr8:49289000-49290200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:49289000-49290400	Enhancers	HSMM	muscle
29	chr8:49289000-49292000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:49289200-49289400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:49289200-49290600	Enhancers	Fetal Stomach	stomach
32	chr8:49289200-49290600	Enhancers	Fetal Thymus	thymus
33	chr8:49289200-49290600	Enhancers	HSMMtube	muscle

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