Variant report

Variant	rs955819
Chromosome Location	chr8:49311560-49311561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49295197..49297090-chr8:49308933..49311651,2	K562	blood:
2	chr8:49306975..49309919-chr8:49310185..49313879,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10096760	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10096946	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10104817	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10108258	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10282826	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282853	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504063	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957084	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11989167	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11989429	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12334582	0.80[ASN][1000 genomes]
rs12334798	0.80[ASN][1000 genomes]
rs12334834	0.80[ASN][1000 genomes]
rs12386841	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12707987	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13259359	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13268799	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13281995	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1510931	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16936986	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34639799	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471752	0.84[ASN][1000 genomes]
rs6471766	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471788	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68052435	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980967	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6983687	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984699	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990833	0.82[CEU][hapmap]
rs6993458	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002733	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7012665	0.82[CEU][hapmap]
rs7013462	0.80[EUR][1000 genomes]
rs7014106	0.80[EUR][1000 genomes]
rs7017438	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816649	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7818323	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs7827432	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7830050	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838570	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871920	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298007	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs949635	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs955467	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792273	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792381	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987211	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49307000-49315200	Enhancers	Fetal Brain Male	brain
2	chr8:49308400-49312200	Enhancers	Fetal Lung	lung
3	chr8:49308600-49311600	Enhancers	Lung	lung
4	chr8:49308800-49313000	Enhancers	Placenta	Placenta
5	chr8:49308800-49313200	Enhancers	Spleen	Spleen
6	chr8:49308800-49315200	Enhancers	Fetal Heart	heart
7	chr8:49309000-49311600	Enhancers	NHDF-Ad	bronchial
8	chr8:49309000-49312600	Enhancers	NHLF	lung
9	chr8:49309000-49314200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49309400-49312200	Enhancers	Fetal Thymus	thymus
11	chr8:49309600-49315400	Enhancers	Ovary	ovary
12	chr8:49309800-49312200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:49309800-49312600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:49309800-49312800	Enhancers	Fetal Kidney	kidney
15	chr8:49309800-49320200	Weak transcription	Aorta	Aorta
16	chr8:49310000-49311800	Enhancers	NH-A	brain
17	chr8:49310000-49312400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr8:49310000-49312600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:49310000-49312800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:49310000-49313000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:49310000-49313000	Enhancers	Osteobl	bone
22	chr8:49310000-49313200	Enhancers	Fetal Stomach	stomach
23	chr8:49310000-49313800	Enhancers	Adipose Nuclei	Adipose
24	chr8:49310000-49314000	Enhancers	Left Ventricle	heart
25	chr8:49310000-49315200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:49310000-49316000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr8:49310200-49312000	Enhancers	Fetal Brain Female	brain
28	chr8:49310200-49312000	Enhancers	HSMM	muscle
29	chr8:49310200-49312400	Enhancers	HSMMtube	muscle
30	chr8:49310200-49313000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr8:49310200-49315000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:49310200-49315000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:49310400-49311600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr8:49310400-49311600	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:49310400-49313600	Enhancers	Fetal Muscle Trunk	muscle
36	chr8:49310400-49315400	Enhancers	Fetal Muscle Leg	muscle
37	chr8:49310600-49311800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr8:49310600-49313200	Enhancers	Right Atrium	heart
39	chr8:49310800-49312000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:49310800-49312000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:49310800-49312000	Weak transcription	Fetal Intestine Large	intestine
42	chr8:49311000-49312400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:49311000-49312800	Weak transcription	Right Ventricle	heart
44	chr8:49311000-49313800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:49311000-49314400	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:49311000-49315000	Weak transcription	Esophagus	oesophagus
47	chr8:49311000-49319400	Weak transcription	Gastric	stomach
48	chr8:49311000-49320000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr8:49311200-49311600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:49311200-49311600	Weak transcription	Brain Anterior Caudate	brain

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