Variant report

Variant	rs6471752
Chromosome Location	chr8:49309167-49309168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49295197..49297090-chr8:49308933..49311651,2	K562	blood:
2	chr8:49306975..49309919-chr8:49310185..49313879,3	MCF-7	breast:
3	chr8:49302521..49305423-chr8:49308458..49310483,2	MCF-7	breast:

rs_ID	r²[population]
rs10096946	0.83[ASN][1000 genomes]
rs10108258	0.83[ASN][1000 genomes]
rs10282826	0.83[ASN][1000 genomes]
rs10504063	0.80[ASN][1000 genomes]
rs11989167	0.83[ASN][1000 genomes]
rs11989429	0.85[ASN][1000 genomes]
rs12707987	0.87[ASN][1000 genomes]
rs13268799	0.83[ASN][1000 genomes]
rs1510931	0.83[ASN][1000 genomes]
rs16936986	0.81[ASN][1000 genomes]
rs16937171	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34639799	0.85[ASN][1000 genomes]
rs55847910	0.83[EUR][1000 genomes]
rs55864946	0.83[EUR][1000 genomes]
rs55914945	0.82[EUR][1000 genomes]
rs55927958	0.83[EUR][1000 genomes]
rs56348830	0.84[EUR][1000 genomes]
rs6471766	0.81[ASN][1000 genomes]
rs68052435	0.83[ASN][1000 genomes]
rs6980967	0.81[ASN][1000 genomes]
rs6983687	0.81[ASN][1000 genomes]
rs6989759	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs7002733	0.80[ASN][1000 genomes]
rs7017438	0.83[ASN][1000 genomes]
rs72637700	0.85[EUR][1000 genomes]
rs72639004	0.81[EUR][1000 genomes]
rs72639005	0.83[EUR][1000 genomes]
rs72639010	0.83[EUR][1000 genomes]
rs72639011	0.83[EUR][1000 genomes]
rs72639012	0.83[EUR][1000 genomes]
rs72639013	0.83[EUR][1000 genomes]
rs72639016	0.83[EUR][1000 genomes]
rs72639020	0.83[EUR][1000 genomes]
rs7827432	0.83[ASN][1000 genomes]
rs7838570	0.83[ASN][1000 genomes]
rs871920	0.84[ASN][1000 genomes]
rs955467	0.87[ASN][1000 genomes]
rs955819	0.84[ASN][1000 genomes]
rs9792273	0.87[ASN][1000 genomes]
rs9792381	0.87[ASN][1000 genomes]

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49294800-49309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49297800-49309200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:49303000-49309200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:49303200-49309200	Weak transcription	Osteobl	bone
5	chr8:49307000-49315200	Enhancers	Fetal Brain Male	brain
6	chr8:49308400-49312200	Enhancers	Fetal Lung	lung
7	chr8:49308600-49309200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:49308600-49309200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:49308600-49309200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
10	chr8:49308600-49309200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:49308600-49309600	Enhancers	Fetal Kidney	kidney
12	chr8:49308600-49310200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr8:49308600-49311600	Enhancers	Lung	lung
14	chr8:49308800-49309200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:49308800-49309200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
16	chr8:49308800-49309200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:49308800-49309200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:49308800-49309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:49308800-49309200	Enhancers	Fetal Brain Female	brain
20	chr8:49308800-49309200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr8:49308800-49309400	Flanking Active TSS	Liver	Liver
22	chr8:49308800-49309400	Flanking Active TSS	Gastric	stomach
23	chr8:49308800-49309400	Enhancers	Right Ventricle	heart
24	chr8:49308800-49309600	Enhancers	Pancreas	Pancrea
25	chr8:49308800-49309800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:49308800-49309800	Enhancers	HSMM	muscle
27	chr8:49308800-49310000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr8:49308800-49310000	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr8:49308800-49310000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr8:49308800-49310200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:49308800-49310400	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr8:49308800-49313000	Enhancers	Placenta	Placenta
33	chr8:49308800-49313200	Enhancers	Spleen	Spleen
34	chr8:49308800-49315200	Enhancers	Fetal Heart	heart
35	chr8:49309000-49309200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr8:49309000-49309200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:49309000-49309200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr8:49309000-49309200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:49309000-49309200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr8:49309000-49309200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:49309000-49309200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:49309000-49309200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
43	chr8:49309000-49309200	Flanking Active TSS	Ovary	ovary
44	chr8:49309000-49309200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr8:49309000-49309200	Enhancers	Stomach Smooth Muscle	stomach
46	chr8:49309000-49309200	Enhancers	NH-A	brain
47	chr8:49309000-49309400	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr8:49309000-49309400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
49	chr8:49309000-49309400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
50	chr8:49309000-49309400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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