Variant report

Variant	rs55864946
Chromosome Location	chr8:49340518-49340519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49336668..49338331-chr8:49339946..49342790,2	K562	blood:
2	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
3	chr8:49339618..49341407-chr8:49342109..49344898,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1123189	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16937171	0.82[EUR][1000 genomes]
rs55656120	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55811450	0.94[AMR][1000 genomes]
rs55847910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55898556	0.82[AMR][1000 genomes]
rs55914945	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55927958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55962116	0.82[AMR][1000 genomes]
rs56054674	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56152712	0.82[AMR][1000 genomes]
rs56308602	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56348830	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58223461	0.84[AMR][1000 genomes]
rs6471752	0.83[EUR][1000 genomes]
rs6989759	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72637612	0.82[AMR][1000 genomes]
rs72637676	0.82[AMR][1000 genomes]
rs72637687	0.82[AMR][1000 genomes]
rs72637688	0.82[AMR][1000 genomes]
rs72637690	0.85[AMR][1000 genomes]
rs72637691	0.85[AMR][1000 genomes]
rs72637696	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637697	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637700	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639004	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639005	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639023	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639024	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639025	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639027	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639028	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639030	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639032	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72639047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72639052	0.84[AMR][1000 genomes]
rs72639068	0.81[AMR][1000 genomes]
rs72639070	0.84[AMR][1000 genomes]
rs907176	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49333800-49341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49338600-49340800	Enhancers	Spleen	Spleen
3	chr8:49339200-49340800	Enhancers	Lung	lung
4	chr8:49339200-49341800	Enhancers	Fetal Brain Male	brain
5	chr8:49339200-49341800	Enhancers	Fetal Brain Female	brain
6	chr8:49339200-49342600	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:49339400-49341800	Enhancers	Brain Substantia Nigra	brain
8	chr8:49339400-49342600	Enhancers	NHDF-Ad	bronchial
9	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
11	chr8:49339600-49342600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:49339800-49340600	Enhancers	Aorta	Aorta
13	chr8:49339800-49340800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:49339800-49340800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:49339800-49340800	Enhancers	Left Ventricle	heart
16	chr8:49339800-49340800	Enhancers	Pancreas	Pancrea
17	chr8:49339800-49340800	Enhancers	Right Atrium	heart
18	chr8:49339800-49340800	Enhancers	Right Ventricle	heart
19	chr8:49339800-49341000	Enhancers	Brain Hippocampus Middle	brain
20	chr8:49339800-49341200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:49339800-49341200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:49339800-49341200	Enhancers	Fetal Lung	lung
23	chr8:49339800-49341400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:49339800-49341400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr8:49339800-49341800	Enhancers	Brain Angular Gyrus	brain
26	chr8:49339800-49342600	Enhancers	NHLF	lung
27	chr8:49339800-49342600	Enhancers	Osteobl	bone
28	chr8:49339800-49344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr8:49340000-49340600	Bivalent Enhancer	Fetal Stomach	stomach
30	chr8:49340000-49340600	Enhancers	Psoas Muscle	Psoas
31	chr8:49340000-49342000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr8:49340000-49342600	Enhancers	Adipose Nuclei	Adipose
33	chr8:49340000-49342800	Enhancers	HUVEC	blood vessel
34	chr8:49340000-49343000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr8:49340000-49343000	Enhancers	HSMM	muscle
36	chr8:49340000-49343200	Enhancers	Ovary	ovary
37	chr8:49340000-49343400	Enhancers	Colonic Mucosa	Colon
38	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
39	chr8:49340000-49345000	Enhancers	Placenta	Placenta
40	chr8:49340200-49340600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:49340200-49340600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:49340200-49340600	Enhancers	Gastric	stomach
43	chr8:49340200-49340600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr8:49340200-49340800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:49340200-49340800	Enhancers	HSMMtube	muscle
46	chr8:49340200-49341200	Enhancers	Fetal Intestine Small	intestine
47	chr8:49340200-49341200	Enhancers	Stomach Smooth Muscle	stomach
48	chr8:49340200-49343000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:49340200-49343200	Enhancers	NH-A	brain
50	chr8:49340200-49343600	Enhancers	Fetal Heart	heart

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