Variant report

Variant	rs55656120
Chromosome Location	chr8:49345257-49345258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49344770..49346621-chr8:49832177..49834578,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1123189	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937171	0.87[EUR][1000 genomes]
rs55811450	0.88[AMR][1000 genomes]
rs55847910	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55864946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55914945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55927958	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56054674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56348830	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989759	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72637690	0.81[ASN][1000 genomes]
rs72637696	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637697	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639004	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639005	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639010	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639011	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639012	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639013	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639016	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639020	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639030	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639047	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs907176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
2	chr8:49341200-49346200	Enhancers	Right Atrium	heart
3	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:49343200-49347000	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:49343400-49345600	Enhancers	Left Ventricle	heart
6	chr8:49343400-49346400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:49343400-49346400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:49343400-49347200	Enhancers	Lung	lung
9	chr8:49343600-49345400	Enhancers	NH-A	brain
10	chr8:49343600-49346200	Enhancers	Brain Substantia Nigra	brain
11	chr8:49343800-49345600	Enhancers	Ovary	ovary
12	chr8:49343800-49345600	Enhancers	NHLF	lung
13	chr8:49343800-49346800	Enhancers	Fetal Lung	lung
14	chr8:49343800-49347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
16	chr8:49344000-49345600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:49344000-49345600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:49344000-49345600	Enhancers	Spleen	Spleen
19	chr8:49344000-49345800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:49344000-49346400	Enhancers	Right Ventricle	heart
21	chr8:49344200-49345400	Enhancers	Fetal Heart	heart
22	chr8:49344200-49345600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:49344200-49346400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:49344200-49346400	Enhancers	Psoas Muscle	Psoas
25	chr8:49344400-49345400	Enhancers	Osteobl	bone
26	chr8:49344400-49346400	Enhancers	Adipose Nuclei	Adipose
27	chr8:49344400-49347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:49344400-49347200	Enhancers	NHDF-Ad	bronchial
29	chr8:49344600-49345600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:49344600-49346200	Enhancers	Aorta	Aorta
31	chr8:49344800-49345400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:49344800-49345400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr8:49344800-49345600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
34	chr8:49344800-49345800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:49344800-49346000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr8:49344800-49346000	Enhancers	HUVEC	blood vessel
37	chr8:49344800-49347200	Weak transcription	Fetal Stomach	stomach
38	chr8:49345000-49345400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:49345000-49345400	Enhancers	Esophagus	oesophagus
40	chr8:49345000-49346000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:49345000-49346200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr8:49345000-49346800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:49345000-49352400	Weak transcription	Brain Cingulate Gyrus	brain

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