Variant report

Variant	rs72637697
Chromosome Location	chr8:49291585-49291586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49286935..49290413-chr8:49291309..49294157,4	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1123189	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55656120	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55811450	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55847910	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55864946	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55898556	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55902055	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55914945	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55927958	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55962116	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56054674	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56057107	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56080763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56152712	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56250422	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56308602	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56322760	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56348830	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58223461	0.87[AMR][1000 genomes]
rs58429544	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58735618	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6989759	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72635698	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72635699	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635700	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635702	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72637612	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637676	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637687	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72637688	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72637690	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637691	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72637694	0.83[ASN][1000 genomes]
rs72637696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637700	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639004	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639005	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72639010	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639011	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639012	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639013	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639016	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639020	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72639023	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639024	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639025	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639027	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639028	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72639030	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72639032	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72639052	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72639057	0.81[AMR][1000 genomes]
rs72639068	0.84[AMR][1000 genomes]
rs72639070	0.87[AMR][1000 genomes]
rs907176	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3376921	chr8:49289399-49293597	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49285600-49292400	Enhancers	NHDF-Ad	bronchial
2	chr8:49286600-49292400	Weak transcription	Spleen	Spleen
3	chr8:49288000-49292400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:49288000-49292400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:49288200-49292600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:49289000-49292000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:49289800-49291800	Weak transcription	NHLF	lung
8	chr8:49290400-49291800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:49290400-49292200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:49290400-49292200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:49290400-49292200	Weak transcription	NH-A	brain
12	chr8:49290400-49292400	Weak transcription	HSMM	muscle
13	chr8:49290600-49291800	Weak transcription	Fetal Stomach	stomach
14	chr8:49290600-49292000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49290600-49292000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:49290600-49292000	Weak transcription	Osteobl	bone
17	chr8:49290600-49292400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:49290600-49292400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:49290600-49292400	Weak transcription	HSMMtube	muscle
20	chr8:49290600-49293200	Weak transcription	Gastric	stomach
21	chr8:49291400-49291600	Flanking Active TSS	Fetal Kidney	kidney
22	chr8:49291400-49291600	Flanking Active TSS	Fetal Lung	lung
23	chr8:49291400-49291600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
24	chr8:49291400-49291800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:49291400-49291800	Enhancers	Pancreas	Pancrea
26	chr8:49291400-49292200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr8:49291400-49292400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:49291400-49292800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:49291400-49292800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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