Variant report

Variant	rs6989759
Chromosome Location	chr8:49296878-49296879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49295197..49297090-chr8:49308933..49311651,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1123189	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55656120	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55811450	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55847910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55864946	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55898556	0.82[AMR][1000 genomes]
rs55914945	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55927958	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55962116	0.82[AMR][1000 genomes]
rs56054674	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56152712	0.82[AMR][1000 genomes]
rs56308602	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56348830	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58223461	0.84[AMR][1000 genomes]
rs6471752	0.85[EUR][1000 genomes]
rs72637612	0.82[AMR][1000 genomes]
rs72637676	0.82[AMR][1000 genomes]
rs72637687	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72637688	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72637690	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72637691	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72637696	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637697	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639004	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639005	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639013	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639023	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72639024	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639025	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639027	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639028	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72639030	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72639032	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72639047	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72639052	0.84[AMR][1000 genomes]
rs72639068	0.81[AMR][1000 genomes]
rs72639070	0.84[AMR][1000 genomes]
rs907176	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981936	chr8:49296803-49297710	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49293800-49303000	Weak transcription	Aorta	Aorta
2	chr8:49294600-49308400	Weak transcription	Fetal Lung	lung
3	chr8:49294800-49297400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49294800-49302400	Weak transcription	HSMMtube	muscle
5	chr8:49294800-49308800	Weak transcription	NHLF	lung
6	chr8:49294800-49309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49295000-49297000	Weak transcription	Fetal Stomach	stomach
8	chr8:49295000-49298200	Strong transcription	Placenta Amnion	Placenta Amnion
9	chr8:49295000-49309000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:49295200-49297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:49296000-49299600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:49296200-49297800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:49296400-49297000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr8:49296400-49297000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:49296400-49297200	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr8:49296400-49297800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:49296400-49297800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:49296400-49297800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:49296600-49297800	Strong transcription	NHDF-Ad	bronchial
20	chr8:49296600-49297800	Strong transcription	Osteobl	bone
21	chr8:49296800-49297600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links