Variant report

Variant	rs72639023
Chromosome Location	chr8:49343544-49343545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49339618..49341407-chr8:49342109..49344898,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1123189	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16937171	0.87[EUR][1000 genomes]
rs55656120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55811450	0.88[AMR][1000 genomes]
rs55847910	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55864946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55914945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55927958	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56054674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56308602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56348830	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989759	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72637696	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637697	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72639004	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639005	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639010	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639011	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639012	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639013	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639016	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639020	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639030	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639047	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs907176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49339800-49344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
5	chr8:49340000-49345000	Enhancers	Placenta	Placenta
6	chr8:49340200-49343600	Enhancers	Fetal Heart	heart
7	chr8:49340200-49344200	Enhancers	Fetal Intestine Large	intestine
8	chr8:49340200-49344400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr8:49340200-49344600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:49340200-49345000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:49340400-49345000	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:49340600-49344000	Weak transcription	Aorta	Aorta
13	chr8:49340600-49344800	Enhancers	Fetal Stomach	stomach
14	chr8:49340800-49344400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:49341200-49343800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:49341200-49343800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:49341200-49343800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:49341200-49344400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:49341200-49346200	Enhancers	Right Atrium	heart
20	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49341400-49343800	Enhancers	Fetal Intestine Small	intestine
22	chr8:49341400-49344200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:49341400-49344200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr8:49341400-49344200	Enhancers	Colon Smooth Muscle	Colon
25	chr8:49341600-49343800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:49341600-49344000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:49341600-49345000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:49341800-49343600	Weak transcription	Brain Angular Gyrus	brain
29	chr8:49341800-49343600	Weak transcription	Brain Substantia Nigra	brain
30	chr8:49342000-49343800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:49342200-49343800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr8:49342400-49343600	Weak transcription	Gastric	stomach
33	chr8:49342400-49343800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:49342400-49343800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr8:49342400-49344000	Weak transcription	Spleen	Spleen
36	chr8:49342400-49344200	Weak transcription	Psoas Muscle	Psoas
37	chr8:49342600-49343600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:49342600-49343800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:49342600-49343800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:49342600-49343800	Flanking Active TSS	NHLF	lung
41	chr8:49342600-49344000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr8:49342600-49344200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr8:49342600-49344200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
44	chr8:49342600-49344200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:49342600-49344400	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr8:49342600-49344400	Flanking Active TSS	NHDF-Ad	bronchial
47	chr8:49342600-49344400	Flanking Active TSS	Osteobl	bone
48	chr8:49342600-49345000	Enhancers	HMEC	breast
49	chr8:49342800-49343600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:49342800-49343600	Weak transcription	Brain Anterior Caudate	brain

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