Variant report

Variant	rs72639004
Chromosome Location	chr8:49319079-49319080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49318960..49320898-chr8:49538715..49540551,2	MCF-7	breast:
2	chr8:49229484..49233078-chr8:49318380..49320785,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1123189	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937171	0.80[EUR][1000 genomes]
rs55656120	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55811450	0.90[AMR][1000 genomes]
rs55847910	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55864946	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55914945	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55927958	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054674	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56308602	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56348830	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58223461	0.81[AMR][1000 genomes]
rs6471752	0.81[EUR][1000 genomes]
rs6989759	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637687	0.82[ASN][1000 genomes]
rs72637688	0.82[ASN][1000 genomes]
rs72637690	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637691	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72637696	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637697	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639005	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639010	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639011	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639012	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639013	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639016	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639020	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639023	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639024	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639025	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639027	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639028	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639030	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639032	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639047	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72639052	0.81[AMR][1000 genomes]
rs72639070	0.81[AMR][1000 genomes]
rs907176	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49309800-49320200	Weak transcription	Aorta	Aorta
2	chr8:49311000-49319400	Weak transcription	Gastric	stomach
3	chr8:49311000-49320000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49313000-49319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:49313000-49320200	Weak transcription	Placenta	Placenta
6	chr8:49313800-49319400	Weak transcription	Right Atrium	heart
7	chr8:49315200-49320000	Weak transcription	Fetal Stomach	stomach
8	chr8:49315400-49319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:49315400-49319400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:49315400-49320000	Weak transcription	Esophagus	oesophagus
11	chr8:49315400-49322200	Weak transcription	Ovary	ovary
12	chr8:49315800-49319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:49315800-49319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49318400-49319400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:49318400-49319800	Enhancers	HSMM	muscle
16	chr8:49318600-49319200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:49318600-49319600	Enhancers	HSMMtube	muscle
18	chr8:49318600-49320200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:49318600-49321400	Enhancers	NHDF-Ad	bronchial
20	chr8:49318600-49321800	Enhancers	Fetal Muscle Trunk	muscle
21	chr8:49318600-49322000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:49318600-49322400	Enhancers	Fetal Muscle Leg	muscle
23	chr8:49318600-49322600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:49318800-49319800	Enhancers	Brain Hippocampus Middle	brain
25	chr8:49318800-49319800	Enhancers	Fetal Lung	lung
26	chr8:49318800-49320000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:49318800-49320000	Enhancers	NH-A	brain
28	chr8:49318800-49320600	Enhancers	HMEC	breast
29	chr8:49318800-49320600	Enhancers	Osteobl	bone
30	chr8:49318800-49320800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:49318800-49320800	Enhancers	HUVEC	blood vessel
32	chr8:49318800-49321000	Enhancers	NHEK	skin
33	chr8:49318800-49321400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:49318800-49321800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:49318800-49322400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:49318800-49322800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr8:49318800-49323000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:49318800-49323000	Enhancers	NHLF	lung
39	chr8:49318800-49323200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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